AMBER Tutorial: How to Create prmtop and rst7 Files of a DNA Molecule using xleap
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AMBER Tutorial: How to Create prmtop and rst7 Files of a DNA Molecule using xleap
We will simulate a B-type DNA octamer using AMBER. In the first step, we will create the prmtop and rst7 files. In this video, we have used xleap to generate the files. The initial structure of the DNA molecule can be created using NAB.
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